2018
CRISPR-guided DNA polymerases enable diversification of all nucleotides in a tunable window.
Halperin, S.O., Tou, C. J., Wong, E.B., Modavi, C., Schaffer, D.V.*, and Dueber, J.E. Nature.
Employing a biochemical protecting group for a sustainable indigo dyeing strategy.
Hsu, T.M., Welner, D.H., Russ, Z.N., Cervantes, B., Prathuri, R.L., Adams, P.D., and Dueber, J.E. Nature Chemical Biology.
Bioproduction of a betalain color palette in Saccharomyces cerevisiae.
Grewal, P.S., Modavi, C., Russ, Z.N., Harris, N.C., and Dueber J.E. Metabolic Engineering.
2017
Iterative optimization of xylose catabolism in Saccharomyces cerevisiae using combinatorial expression tuning.
Latimer, L. N., & Dueber, J.E. Biotechnology and Bioengineering.
2016
Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways.
Deloache, W. C., Russ, Z. N., & Dueber, J. E. Nature Communications.
Microbial Factories for the Production of Benzylisoquinoline Alkaloids. Trends in Biotechnology. 34(3):228-241.
Narcross, L., Fossati, E., Bourgeois, L., Dueber, J. E., & Martin, V. J. J.
Application of a Palladium-Catalyzed C-H Functionalization/Indolization Method to Syntheses of cis-Trikentrin A and Herbindole B.
Leal, R. A., Bischof, C., Lee, Y. V., Sawano, S., McAtee, C. C., Latimer, L. N., Russ, Z. N., Dueber, J. E., Yu, J., Sarpong, R. Angewandte Chemie.
2015
A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy
Chen, R., Rishi, H. S., Potapov, V., Yamada, M. R., Yeh, V. J., Chow, T., et al.
ACS Synthetic Biology
An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose.
DeLoache, W.C., Russ, Z.N., Narcross, L., Gonzales, A.M., Martin V.J.J., Dueber, J.E. Nature Chemical Biology
A Highly-characterized Yeast Toolkit for Modular, Multi-part Assembly.
Lee, M.E., DeLoache, W.C., Cervantes, B., Dueber, J.E.
ACS Synthetic Biology
Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds.
Zalatan, J. G., Lee, M. E., Almeida, R., Gilbert, L. A., Whitehead, E. H., La Russa, M., Tsai, J.C., Weissman, J.S., Dueber, J.E., Qi, L.S., Lim, W.A.
Cell
2014
Selection of chromosomal DNA libraries using a multiplex CRISPR system.
Ryan, O. W., Skerker, J. M., Maurer, M. J., Li, X., Tsai, J. C., Poddar, S., Lee, M.E., DeLoache, W.C., Dueber, J.E., Arkin, A.P., Cate, J.H.D.
S eLife Sciences
Employing a combinatorial expression approach to characterize xylose utilization in Saccharomyces cerevisiae.
Latimer, L.N., Lee, M.E., Medina-Cleghorn, D., Kohnz, R.A., Nomura, D.K., Dueber, J.E. Metabolic Engineering
Avoidance of Truncated Proteins from Unintended Ribosome Binding Sites within Heterologous Protein Coding Sequences.
Whitaker, W. R., Lee, H., Arkin, A. P., Dueber, J.E.
ACS Synthetic Biology
Design and Implementation of a Biomolecular Concentration Tracker.
Hsiao, V., de Los Santos, E. L. C., Whitaker, W. R., Dueber, J. E., & Murray, R. M.
Cold Spring Harbor Laboratory
Cell-free protein synthesis: Search for the happy middle.
Russ, Z.N., Dueber, J.E.
Biotechnology Journal
Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes.
Benz, J.P., Protzko, R.J., Andrich, J.M.S., Bauer, S., Dueber, J.E., Somerville, C.R. Biotechnology for Biofuels
2013
Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay.
Lee ME, Aswani A, Han AS, Tomlin CJ, Dueber JE.
Nucleic Acids Research
Compartmentalizing metabolic pathways in organelles.
Deloache, W.C., Dueber, J.E.
Nature Biotechnology
2012
Engineering robust control of two-component system phosphotransfer using modular scaffolds.
Whitaker WR, Davis SA, Arkin AP, Dueber JE.*
Proc.Natl Acad Sci USA
Spatial Organization of Enzymes for Metabolic Engineering.
Lee, H., DeLoache, W. and Dueber, J.E.*
Metabolic Engineering
DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency.
Conrado, R.J, Wu, G.C., Boock, J.T., Xu, H., Chen, S.Y., Lebar, T., Turnsek, J., Tomsic, N., Avbelj, M., Gaber, R., Koprivnjak, T., Mori, J., Glavnik, V., Vovk, I., Bencina, M. Hodnik, V. Anderluh, G., Dueber, J.E., Jerala, R., and DeLisa, M.P.*
Nucleic Acids Research
2011
Metabolic Flux Enhancement by Synthetic Protein Scaffolding.
Whitaker, W.R. and Dueber, J.E.*
Methods in Enzymology
2010
Shaking up genome engineering.
Tipton, K.A., Dueber, J.E.
Nat Biotechnol
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli.
Moon, T.S., Dueber, J.E., Shiue, E. Prather KL.*
Metabolic Engineering
BglBricks: A flexible standard for biological part assembly.
Anderson, J.C., Dueber, J.E., Leguia, M., Wu, G.C., Goler, J.A., Arkin, A.P, Keasling, J.D.
Journal of Biological Engineering
2009
Synthetic protein scaffolds provide modular control over flux through an engineered metabolic pathway.
Dueber, J.E.*, Wu, G.C, Malmirchegini, G.R., Moon, T.S., Petzold C.J., Ullal, A.V., Prather, K.L.J., Keasling, J.D.
Nature Biotechnology
2008
The pathogen protein EspFU hijacks actin polymerization using mimicry and multivalency.
Sallee, N.A., Rivera, G.M., Dueber J.E., Mullins, R.D, Mayer, B.J., Lim W.A.*
Nature
2007
Engineering synthetic signaling proteins with ultrasensitive input/output control.
Dueber, J.E., Mirsky, E.A., Lim, W.A.*
Nature Biotechnology
2004
Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry.
Dueber, J.E., Yeh, B.J., Bhattacharyya, R.P., Lim, W.A.*
Current Opinion in Structural Biology
2003
Reprogramming control of an allosteric signaling switch through modular recombination.
Dueber, J.E., Yeh, B.J., Chak K., Lim, W.A.*
Science
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